Arsenal secured top spot in Group A ahead of PSG while Barcelona's 4-0 win saw them match the 20-goal Champions League group-stage record.
Aguero suspended after being sent off for a two-footed challenge on Chelsea defender David Luiz as City were beaten 3-1 on Saturday.
"It was a pity that they managed to score the free-kick," Griezmann said.
Javier Mascherano complained that he is all too often blamed when Barcelona struggle after making his 300th appearance for the club.
PSG chairman and CEO Nasser Al-Khelaifi has given coach Unai Emery his backing despite Tuesday's 2-2 draw at home to Ludogorets Razgrad.
Gabon international Aubameyang, 27, is under contract at Dortmund until 2020, but has spoken of his desire to play for Madrid one day.