Nigeria's Appeal Court on Monday set aside the ruling of a federal high court re-listing a case against the NFF which was struck out in October 2014.
Nigeria's League Management Company (LMC) signed a partnership Memorandum of Understanding this week.
Nigeria has become the first African country to implement the FIFA TMS Domestic Transfer Matching System (DTMS).
Amodu, a four-time coach of Nigeria's national team, was the NFF's technical director -- a role he had held since 2013.
Stephen Keshi, one of only two men to have won the Africa Cup of Nations as a player and coach, has died in his native Nigeria at the age of 54.
Giwa FC have been expelled from the Nigerian Professional Football League for a serious rule breach.